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nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline
https://nf-co.re/eager
MIT License
148 stars 82 forks source link

Investigate if using `.sort()` can fix some of the suboptimal -resume / caching issues #870

Closed jfy133 closed 2 years ago

jfy133 commented 2 years ago

I've noticed sometimes eager will start back from much earlier in the pipeline than expected when using -resume.

I just saw on nf-core/mag that @skrakau made this PR: https://github.com/nf-core/mag/pull/290

Which is interesting and I wonder if this may also work for solving the issue above...

jfy133 commented 2 years ago

Not necessary

https://github.com/nf-core/eager/pull/902