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nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline
https://nf-co.re/eager
MIT License
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Operator `into` has been deprecated -- it's not available in DSL2 syntax #884

Closed hypotheses closed 2 years ago

hypotheses commented 2 years ago

I have just install nextflow and pull eager to test with the command below and got the error as mentioned.

./nextflow run nf-core/eager -profile test,docker N E X T F L O W ~ version 22.04.0 Pulling nf-core/eager ... downloaded from https://github.com/nf-core/eager.git Launching https://github.com/nf-core/eager [golden_austin] DSL2 - revision: 43a239bd13 [master]

                                    ,--./,-.
    ___     __   __   __   ___     /,-._.--~'

|\ | | / / \ |__) |__ } { | \| | \__, \__/ | \ |___ \-.,--, .,._,' nf-core/eager v2.4.4

Operator into has been deprecated -- it's not available in DSL2 syntax

-- Check script '.nextflow/assets/nf-core/eager/main.nf' at line: 198 or see '.nextflow.log' file for more details

jfy133 commented 2 years ago

Hi @hypotheses please try adding -dsl1 to the end of your command.

There is a new version of the nextflow language called dsl2 that has been made default in the latest version of nextflow (v22:04, I believe).

The -dsl1 flag tells nextflow to use the earlier version of the language, that eager is currently written in.

Please let me know if that works for you and we can close this issue

hypotheses commented 2 years ago

Thank you for your help. Adding -dsl1 worked! 👯‍♂️