DSL2: pop-gen - Githubissues

nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

https://nf-co.re/eager

MIT License

140 stars 80 forks source link

DSL2: pop-gen #924

Open jfy133 opened 1 year ago

jfy133 commented 1 year ago

DEDUP/MARKDUPLICATES
MTNUCRATIO
NUCLEARCONTAMINATION (HUMAN)
SEXDETERRMINE
PMDTOOLS
BAMUTILS
MAPDAMAGE2 (RESCALE)
GATKUNIFIEDGENOTYPER
GATKHAPLOTYPECALLER
PILEUPCALLER
FREEBAYES
ANGSD

NEW

Dedup parallisation (per chromosome)
HAPLOGREP
HAPLOCART
AUTHENTICT
Extra genotypers? samtools pileupcaller?
Combine SS & DS genotpyes

### Tasks
- [ ] #944  
- [ ] #958 
- [ ] #976
- [ ] #1035
- [ ] #1045
- [ ] #1016
- [ ] #917