Is your feature request related to a problem? Please describe
I wanted to run mapdamage rescale with 15 bp at the end of each read since I have some samples with a lot of damage. However, that seems only to be possible if the mapdamage --seq-length parameter is also increased from the default of 12 bp set in eager. However, it is not currently possible to adjust the --seq-length parameter in nf-core/eager. Could this be added in the next release? Now I have to run it outside the pipeline, which is annoying
Describe the solution you'd like
Implement the --seq-length paramter from mapdamage.
apeltzer
commented
1 year ago
Is your feature request related to a problem? Please describe
I wanted to run mapdamage rescale with 15 bp at the end of each read since I have some samples with a lot of damage. However, that seems only to be possible if the mapdamage --seq-length parameter is also increased from the default of 12 bp set in eager. However, it is not currently possible to adjust the --seq-length parameter in nf-core/eager. Could this be added in the next release? Now I have to run it outside the pipeline, which is annoying
Describe the solution you'd like
Implement the --seq-length paramter from mapdamage.
Describe alternatives you've considered
Additional context