Closed ashildv closed 1 year ago
I have checked the following places for your error:
This is the command nf-core eager ran, there is missing equal sign here: " --rescale-length-5p 15"
From the .command.sh file:
mapDamage -i sample_rmdup.bam -r reference.fasta --rescale --rescale-out sample_rmdup_rescaled.bam --rescale-length-5p 15 --rescale-length-3p=15 samtools index sample_rmdup_rescaled.bam
Steps to reproduce the behaviour:
nextflow run ...
Have you provided the following extra information/files:
.nextflow.log
Fixed in #935
Check Documentation
I have checked the following places for your error:
Description of the bug
This is the command nf-core eager ran, there is missing equal sign here: " --rescale-length-5p 15"
From the .command.sh file:
!/bin/bash -euo pipefail
mapDamage -i sample_rmdup.bam -r reference.fasta --rescale --rescale-out sample_rmdup_rescaled.bam --rescale-length-5p 15 --rescale-length-3p=15 samtools index sample_rmdup_rescaled.bam
Steps to reproduce
Steps to reproduce the behaviour:
nextflow run ...
Expected behaviour
Log files
Have you provided the following extra information/files:
.nextflow.log
fileSystem
Nextflow Installation
Container engine
Additional context