DSL2: aDNA Damage Manipulation

nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline

https://nf-co.re/eager

MIT License

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DSL2: aDNA Damage Manipulation #957

Closed TCLamnidis closed 7 months ago

TCLamnidis commented 1 year ago

Add DNA damage manipulation options:

mapDamage2 rescale
pmdtools filter
bamUtils trimbam

TCLamnidis commented 1 year ago

Addition of reference masking before pmdtools filtering will depend a lot on the multi-reference mapping implementation, so I would leave it as a todo for now