nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline
https://nf-co.re/eager
MIT License
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DSL2: PMDTools for estimation vs manipulation of damage #989

Open TCLamnidis opened 1 year ago

TCLamnidis commented 1 year ago

Now that we separated damage estimation and manipulation, PMDTools would need to be ran twice potentially, once for PMD Filtering and once as a damage estimation tool (if so chosen by the user)

The current options would then fall into two separate categories:

Damage Manipulation

Damage Estimation