nf-core / eager

A fully reproducible and state-of-the-art ancient DNA analysis pipeline
https://nf-co.re/eager
MIT License
129 stars 78 forks source link

DSL2: Ensure to document input run BAMs will _not_ be merged with FASTQ libraries even if same name #994

Open jfy133 opened 1 year ago

jfy133 commented 1 year ago

Must either confvert to FASTQ and remap, or do manually outside

TCLamnidis commented 3 months ago

Why? Library merge comes after mapping anyway?

jfy133 commented 3 months ago

I think this is old now...