nf-core / exoseq

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http://nf-co.re
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Evaluate / Integrate Googles DeepVariant Caller? #10

Closed apeltzer closed 5 years ago

maxulysse commented 6 years ago

I'll follow this one closely ;-)

marchoeppner commented 6 years ago

GATK is bringing its own version of that now, should be less painful to get up and running (the google one seems like a pita)

https://software.broadinstitute.org/gatk/documentation/tooldocs/4.0.3.0/org_broadinstitute_hellbender_tools_walkers_vqsr_CNNScoreVariants.php