Split MultiQC output into fastq, library and sample

nf-core / exoseq

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Split MultiQC output into fastq, library and sample #21

Open marchoeppner opened 6 years ago

marchoeppner commented 6 years ago

If we support an input mode in which we support sample IDs and multi-lane sequencing configs, it would make sense to split the MultiQC reports into these three tiers:

the fastq file(s)

fastqc report

the sequencing library

MarkDuplicate stats

the sample

Picard HS
alignment stats
picard multiple metrics (CollectMultipleMetrics)