nf-core fetchngs issues

nf-core / fetchngs

Pipeline to fetch metadata and raw FastQ files from public databases

https://nf-co.re/fetchngs

MIT License

151 stars 73 forks source link

issues

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Add ampliseq samplesheet creation dependent on #790 in ampliseq

#324 jenmuell opened 4 weeks ago
1
Important! Template update for nf-core/tools v3.0.2

#323 nf-core-bot closed 1 month ago
1
Important! Template update for nf-core/tools v3.0.1

#322 nf-core-bot closed 1 month ago
1
Important! Template update for nf-core/tools v3.0.0

#321 nf-core-bot closed 1 month ago
1
318 update for tes compliance

#320 vsmalladi closed 1 month ago
6
318 update some modeles for tes compliance

#319 vsmalladi closed 2 months ago
2
Update some modeles for TES compliance

#318 vsmalladi opened 2 months ago
0
SRATOOLS_FASTERQDUMP failing due to missing fastq file

#317 edg1983 opened 4 months ago
11
Use nf-core/setup-nf-test action for reusability

#316 adamrtalbot closed 1 month ago
3
Support for CNBG

#315 nathaniel-mahieu opened 4 months ago
0
DDBJ study ids (DRP123456) do not map correctly

#314 awalsh17 opened 4 months ago
0
Support for GSA accessions

#313 millerh1 opened 6 months ago
0
Proposal: DSL2+

#312 bentsherman closed 3 weeks ago
1
Important! Template update for nf-core/tools v2.14.1

#311 nf-core-bot closed 1 month ago
1
Important! Template update for nf-core/tools v2.14.0

#310 nf-core-bot closed 6 months ago
1
Proposal: Static types

#309 bentsherman opened 7 months ago
10
Refactor ext config as params

#308 bentsherman closed 6 months ago
15
Update detect-nf-test-changes to v0.0.3

#307 adamrtalbot closed 7 months ago
1
feat: use github action instead of custom python

#306 adamrtalbot closed 7 months ago
1
Update module sratools prefetch

#305 suhrig closed 6 months ago
3
Update wget

#304 pvanheus closed 8 months ago
2
update wget container for SRA_FASTQ_FTP from 1.20.1 to 1.21.4

#303 ajandria closed 8 months ago
2
Workflow output DSL (channel selectors)

#302 bentsherman closed 8 months ago
3
SRA file links deprecated

#301 tiendu opened 8 months ago
3
Use paths instead of tags as matrix variable

#300 adamrtalbot closed 8 months ago
1
Important! Template update for nf-core/tools v2.13.1

#299 nf-core-bot closed 9 months ago
1
export CONDA_PREFIX into container when using Singularity and Apptainer

#298 drpatelh closed 9 months ago
1
DO NOT MERGE - THIS is a test

#297 maxulysse closed 8 months ago
2
Remove params.outdir from tests where required and update snapshots

#296 drpatelh closed 9 months ago
3
be less stringent with tests expectation

#295 maxulysse closed 9 months ago
2
replace mermaid diagram with subway map

#294 maxulysse closed 9 months ago
1
Automatic retrieval of input id.csv from test-datasets for test profile

#293 pmoris closed 9 months ago
5
aspera `CONDA_PREFIX` error

#292 mniederhuber closed 9 months ago
1
wget host address error

#291 mniederhuber opened 9 months ago
9
Remove mentions of deprecated Synapse functionality in pipeline

#290 drpatelh closed 9 months ago
1
Cloud tests switched to using a matrix strategy

#289 adamrtalbot opened 9 months ago
2
Update Github Action to run full-sized test for all 3 download methods

#288 drpatelh closed 9 months ago
2
URGENT: pin nf-validation version

#287 nvnieuwk closed 9 months ago
1
Dev -> Master for v1.12.0 release

#286 drpatelh closed 9 months ago
1
`vdb-validate` does not detect file corruption

#285 suhrig closed 6 months ago
5
Replace base SHA with original pull request base SHA instead of updated one so diff is more restrictive

#284 adamrtalbot closed 9 months ago
2
Important! Template update for nf-core/tools v2.13

#283 nf-core-bot closed 9 months ago
2
Add double fake change to see if the CI/CD double tests

#282 adamrtalbot closed 9 months ago
4
Add a fake change to FASTQ_DOWNLOAD_PREFETCH_FASTERQDUMP_SRATOOLS to trigger some tests

#281 adamrtalbot closed 9 months ago
1
Add a fake change to UNTAR to trigger some tests

#280 adamrtalbot closed 9 months ago
1
Replace --force_* parameters with --download_method parameter

#279 drpatelh closed 9 months ago
1
confirm-pass will pass if no tests are triggered

#278 adamrtalbot closed 9 months ago
1
Revert to using FTP for default downloads over Aspera

#277 drpatelh closed 9 months ago
2
chore: Emiller88 => edmundmiller

#276 edmundmiller closed 9 months ago
1
Workflow output definition

#275 bentsherman closed 6 months ago
35