This merges master branch into dev to update all history. It also includes the post-release version bump to 1.2.0dev.
It is basically the same as #349 plus minor changes from master e.g. bakta version update.
I resolved the merge conflicts to a new branch, otherwise master branch would have been updated which is not desired.
Supersedes #349.
PR checklist
[x] This comment contains a description of changes (with reason).
[ ] If you've fixed a bug or added code that should be tested, add tests!
[ ] If you've added a new tool - have you followed the pipeline conventions in the contribution docs
[ ] If necessary, also make a PR on the nf-core/funcscan branch on the nf-core/test-datasets repository.
[ ] Make sure your code lints (nf-core lint).
[ ] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
[ ] Usage Documentation in docs/usage.md is updated.
[ ] Output Documentation in docs/output.md is updated.
[ ] CHANGELOG.md is updated.
[ ] README.md is updated (including new tool citations and authors/contributors).
This merges master branch into dev to update all history. It also includes the post-release version bump to
1.2.0dev
. It is basically the same as #349 plus minor changes from master e.g. bakta version update.I resolved the merge conflicts to a new branch, otherwise master branch would have been updated which is not desired.
Supersedes #349.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).