Closed Vedanth-Ramji closed 1 month ago
nf-core lint
overall result: Passed :white_check_mark:Posted for pipeline commit 451cd52
+| ✅ 334 tests passed |+
#| ❔ 1 tests were ignored |#
@nf-core-bot fix linting
LGTM now thank you very much @Vedanth-Ramji !
Just waiting on the last snapshot update from Jasmin, and then the :heavy_check_mark: from @Darcy220606 and good to go!
argNorm is a tool to normalize antibiotic resistance genes (ARGs) by mapping them to the antibiotic resistance ontology (ARO) created by the CARD database. argNorm also enhances antibiotic resistance gene annotations by providing drug categorization of the drugs that antibiotic resistance genes confer resistance to.
In
funcscan
argNorm is part of the ARG screening subworkflow and it takes the hAMRonized outputs ofdeeparg
,amrfinderplus
, andabricate
and normalizes them to the ARO.