I conducted a run using the following command and nextflow.config.
conda activate nf-core
nextflow run nf-core/genomeannotator -r dev -profile conda
Command error:
.command.sh: 行 2: gaas_fasta_filter_by_size.pl: not found such a command
How can I install required executables including the gaas_fasta_filter_by_size.pl script?
P.S. I tried to run with 'nextflow run nf-core/genomeannotator -r dev -profile singularity' before using -profile conda.
But I encountered the same error as "#18 Pipeline fail at REPEATMASKER_STAGELIB".
In this case, several parameter settings, including singularity.runOptions/singularity.envWhitelist in nextflow.config and SINGULARITY_BIND, had no effect.
Description of the bug
I conducted a run using the following command and nextflow.config. conda activate nf-core nextflow run nf-core/genomeannotator -r dev -profile conda
Command error: .command.sh: 行 2: gaas_fasta_filter_by_size.pl: not found such a command
How can I install required executables including the gaas_fasta_filter_by_size.pl script?
P.S. I tried to run with 'nextflow run nf-core/genomeannotator -r dev -profile singularity' before using -profile conda. But I encountered the same error as "#18 Pipeline fail at REPEATMASKER_STAGELIB". In this case, several parameter settings, including singularity.runOptions/singularity.envWhitelist in nextflow.config and SINGULARITY_BIND, had no effect.
Command used and terminal output
No response
Relevant files
No response
System information
No response