The ncbigenomedownload module from nf-core requires a file with a list of accessions, and, therefore, needs a path as input. Excon, which I'm trying to mimic here, requires a value string as input.
To fix this problem, at least temporariIy, I added in modules/local/create_path.csv a module that creates one file per species which contains one single accession, which is then used as an input by ncbigenomedownload.
The ncbigenomedownload module from nf-core requires a file with a list of accessions, and, therefore, needs a path as input. Excon, which I'm trying to mimic here, requires a value string as input.
To fix this problem, at least temporariIy, I added in
modules/local/create_path.csv
a module that creates one file per species which contains one single accession, which is then used as an input by ncbigenomedownload.