I added the longest isoform module from the synteny pipeline, as well as the GFFREAD module from nf-core. I also added the PIGZ module to uncompress files if necessary, as the GFFREAD module does not work with compressed files (issue #18).
The solution for compressed files is not pretty, but it works for now.
Hi @chriswyatt1
I added the longest isoform module from the synteny pipeline, as well as the GFFREAD module from nf-core. I also added the PIGZ module to uncompress files if necessary, as the GFFREAD module does not work with compressed files (issue #18).
The solution for compressed files is not pretty, but it works for now.
I think this is ready to be merged.