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nf-core / genomeqc

Compare the quality of multiple genomes, along with their annotations.
https://nf-co.re/genomeqc
MIT License
3 stars 8 forks source link

Added TIDK subworkflow #23

Closed FernandoDuarteF closed 1 month ago

FernandoDuarteF commented 1 month ago

It works.

I added --minimum 5 --maximum 12 arguments for tidk explore, which are supposed to be the default values.

chriswyatt1 commented 1 month ago

Cool. Yes, I wasn't sure how to approach the missing flags from that command. Looks correct. I would have thought this should be packaged into the subworkflow so you don't need to change this.

FernandoDuarteF commented 1 month ago

Yeah, if you go to the tidk github, these are apparetly the values by default, but it fails if you don't explicitly set both flags.