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nf-core / genomeqc

Compare the quality of multiple genomes, along with their annotations.
https://nf-co.re/genomeqc
MIT License
1 stars 1 forks source link

Gitpod config doesn't work #34

Open chriswyatt1 opened 3 days ago

chriswyatt1 commented 3 days ago

I get lots of errors using the config. The config is used to reduce the cpu requirements of orthofinder etc, so that it can run.

But get error:

-[ecoflow/genomeqc] Pipeline completed with errors-
ERROR ~ Error executing process > 'ECOFLOW_GENOMEQC:GENOMEQC:QUAST (Vespa_velutina)'

Caused by:
  Process requirement exceeds available CPUs -- req: 6; avail: 4

when -profile gitpod contains:

process {

    withName: 'ORTHOFINDER' {
        memory = '30.GB'
        cpus = 4
    }

    withName: 'QUAST' {
        memory = '30.GB'
        cpus = 4
    }

}