When running genomeqc on assests/samplesheet.csv (bees and wasps) BUSCO fails on the SEPP step with this warning message:
Placements failed. Try to rerun increasing the memory or select a lineage manually.
even though 72GB of RAM are being used.
SEPP is being used to automatically infer the lineage database. When the lineage database is explcitly set, BUSCO runs successfully.
Also, check error log file /lustre/home/ucbtfrd/pipelines/genomeqc_subworkflows/work/ff/455472097fece4ccdf81cfdaa15a9b/Osmia_bicornis-auto-busco/Osmia_bicornis.fasta/logs/sepp_err.log for more information.
When running
genomeqc
onassests/samplesheet.csv
(bees and wasps) BUSCO fails on the SEPP step with this warning message:even though 72GB of RAM are being used.
SEPP is being used to automatically infer the lineage database. When the lineage database is explcitly set, BUSCO runs successfully.
Also, check error log file
/lustre/home/ucbtfrd/pipelines/genomeqc_subworkflows/work/ff/455472097fece4ccdf81cfdaa15a9b/Osmia_bicornis-auto-busco/Osmia_bicornis.fasta/logs/sepp_err.log
for more information.