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nf-core / genomeqc

Compare the quality of multiple genomes, along with their annotations.
https://nf-co.re/genomeqc
MIT License
3 stars 10 forks source link

Add `merqury` to pipeline #42

Closed chriswyatt1 closed 1 month ago

chriswyatt1 commented 1 month ago

Example from Usman: https://github.com/Plant-Food-Research-Open/assemblyqc

Used in genome only mode. Already an nf-core module

stephenturner commented 1 month ago

Also needs meryl for building kmer dbs for merqury

chriswyatt1 commented 1 month ago

Could you add a PR?. May be easier to think about how to integrate it

stephenturner commented 1 month ago

Draft PR in #63 with more info