Closed chriswyatt1 closed 1 week ago
Hopefully done here: https://github.com/nf-core/test-datasets/pull/1339
Used just two mycoplasma genomes 2000 lines, and 300 lines of their gff files. Maybe a little too small, but working with gffread and orthofinder.
We should probably use the 4-field format, whether running with local files or RefSeq IDs
Solved and included in the test config. See nf-core/test-datasets#1343
We need a small test dataset for the whole pipeline, following nf-core guides.
I think this could be just two chromosomes (or parts of chromosomes that are orthologous). Could be super small, like 10000bp total. I am pretty sure all the code will work on tiny chromosomes.