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nf-core / genomeqc

Compare the quality of multiple genomes, along with their annotations.
https://nf-co.re/genomeqc
MIT License
2 stars 8 forks source link

Merqury inputs should use database+assembly (fasta, not fastq) #75

Closed stephenturner closed 1 week ago

stephenturner commented 2 weeks ago

Merqury inputs should include the meryl db (created from reads), and the assembly.

https://github.com/nf-core/genomeqc/blob/5e5f897730524eb771aa574920a42064876f1ea1/modules/nf-core/merqury/merqury/main.nf#L11-L12

Typo in the current implementation that joins to the reads (fasta), not the assembly.

https://github.com/nf-core/genomeqc/blob/5e5f897730524eb771aa574920a42064876f1ea1/workflows/genomeqc.nf#L127-L129

Need to change this to fasta, not fastq.

Also need to change this in the subworkflow nf-core/modules#6905

FernandoDuarteF commented 1 week ago

Fixed here 49a21b3.