Transition of python templates to scripts in QC workflow

[abhi18av]

Hey there :wave:, We tried to update some modules using binary structure instead of templates, the changed files were:

• [x] dups
• [x] hweplot
• [x] showmaf
• [x] xCheck
• [x] hweplot
• [x] removeRelInds
• [x] select_diff_miss_qcplink
• [x] select_miss_het_qcplink

We updated how the modules use them, trying to use explicit parameters on script side. One thing that I'd like to point, is that I added the FIX keyword for some parameters that should be added to the module for the complete deployment on the usage of binaries instead of templates.

This is a important step towards the qc update, and your considerations are very welcome, please feel free to add them, also feel free to update add commits to the mxrcon/dev-python-parser branch

[abhi18av]

Merging this as it will resolve the blockers for completion of QC workflow

Thanks @Mxrcon !