Buffer underflow on -resume

[syfobfx]

Hi all,

I am getting a Buffer underflow error while running the pipeline with the -resume option, after a failed run.

The command line is:

nextflow run nf-core/hic \ -revision 1.3.0 \ -profile genotoul \ -resume \ -c /work2/project/bovreg/results/hic/nfcoreruns/Run_pool_BOVREGH2020.18981.conf \ -work-dir /work2/project/bovreg/results/hic/nfcoreruns/Run_pool_BOVREGH2020.18981/work \ --fasta /work2/project/bovreg/data/genome/ARS-UCD1.2_Btau5.0.1Y.fa \ --bwt2_index /work2/project/bovreg/data/genome \ --outdir /work2/project/bovreg/results/hic/nfcoreruns/Run_pool_BOVREGH2020.18981 \ --input '/work2/project/bovreg/data/reads/hic/Run_pool_BOVREGH2020.18981/*R{1,2}.fastq.gz'\ --bwt2_opts_end2end '--very-sensitive -L 30 --score-min L,-0.6,-0.2 --end-to-end --reorder' \ --bwt2_opts_trimmed '--very-sensitive -L 20 --score-min L,-0.6,-0.2 --end-to-end --reorder' \ --min_mapq 10 \ --digestion 'arima' \ --chromosome_size /work2/project/bovreg/data/genome/ARS-UCD1.2_Btau5.0.1Y.fa.chromlen \ --min_insert_size 20 \ --max_insert_size 1000 \ --bin_size '1000000,200000,50000,10000,1000' \ --save_interaction_bam \ --hicpro_maps \ --ice_max_iter 100 \ --ice_filter_low_count_perc 0.02 \ --ice_filter_high_count_perc 0 \ --ice_eps 0.1 \ --res_compartments '500000,200000' \ --tads_caller 'insulation,hicexplorer' \ --res_tads '100000,50000' \ --split_fastq --fastq_chunks_size 10000000

The log file is attached Run_pool_BOVREGH2020.18981.log

The previous log file is also attached. Run_pool_BOVREGH2020.18981.bk.log

I tried to solve that original issue by just extending the time value of the trim_reads process in the config file and by running the same command again, but this is how I got that Buffer underflow error.

Thanks a lot for the assistance.