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nf-core / hic

Analysis of Chromosome Conformation Capture data (Hi-C)
https://nf-co.re/hic
MIT License
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Bioframe error #149

Closed jbv2 closed 1 year ago

jbv2 commented 2 years ago

I cloned the repository and followed the instructions of 'Dockerfile'. I tried to test de pipeline by using: nextflow run nf-core/hic --input '*_R{1,2}.fastq.gz' -profile test

But I got an error in process > tads_insulation: ImportError: cannot import name 'parse_regions' from 'bioframe' (/home/judith/miniconda3/envs/nf-core-hic-1.3.0/lib/python3.7/site-packages/bioframe/__init__.py)

maxulysse commented 1 year ago

@jbv2 Sorry your issue did got noticed because it was in the wrong repo. I hope you found a fix since it was some time ago. I'm guessing your issue might be due to the fact you were missing docker as a profile as well. Please feel free to re-open the issue if it's still one for you