Fix incorrect handling of --restriction_site and --ligation_site params

robomics commented 1 year ago

Fixes https://github.com/nf-core/hic/issues/150

github-actions[bot] commented 1 year ago

This PR is against the `master` branch :x:

Do not close this PR
Click Edit and change the base to dev
This CI test will remain failed until you push a new commit

Hi @robomics,

It looks like this pull-request is has been made against the robomics/hic master branch. The master branch on nf-core repositories should always contain code from the latest release. Because of this, PRs to master are only allowed if they come from the robomics/hic dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page. Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

github-actions[bot] commented 1 year ago

Python linting (`black`) is failing

To keep the code consistent with lots of contributors, we run automated code consistency checks. To fix this CI test, please run:

Install black: pip install black
Fix formatting errors in your pipeline: black .

Once you push these changes the test should pass, and you can hide this comment :+1:

We highly recommend setting up Black in your code editor so that this formatting is done automatically on save. Ask about it on Slack for help!

Thanks again for your contribution!

nf-core / hic