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nf-core / hic

Analysis of Chromosome Conformation Capture data (Hi-C)
https://nf-co.re/hic
MIT License
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TADs calling #55

Closed nservant closed 3 years ago

nservant commented 4 years ago

Add a TADs calling step

cooltools ;

cooltools call-compartments ...

HiCExplorer

 hicFindTADs --matrix ${h5mat} \
          --outPrefix tad \
          --correctForMultipleTesting fdr \
          --numberOfProcessors ${task.cpus}

FANC

fanc insulation ...
nservant commented 3 years ago

cooltools and hicExplorer have been added in 1.3.0dev