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nf-core / kmermaid

k-mer similarity analysis pipeline
https://nf-co.re/kmermaid
MIT License
19 stars 12 forks source link

KMERMAID: Convert all parameter docs to JSON schema #133

Open apeltzer opened 3 years ago

apeltzer commented 3 years ago

Hi!

this is not necessarily an issue with the pipeline, but in order to streamline the documentation group next week for the hackathon, I'm opening issues in all repositories / pipeline repos that might need this update to switch from parameter docs to auto-generated documentation based on the JSON schema.

This will then supersede any further parameter documentation, thus making things a bit easier :-)

If this doesn't apply (anymore), please close the issue. Otherwise, I'm hoping to have some helping hands on this next week in the documentation team on Slack https://nfcore.slack.com/archives/C01QPMKBYNR

maxibor commented 2 years ago

The schema does exist, but needs an update, and default value change for some string parameters to null instead of false in nextflow.config