Before adding khtools extract-coding/sencha translate, older versions of kmermaid allowed for --peptide_fasta to be a bunch of protein files who could then be sketched via sourmash directly. Now, --peptide_fasta is used only for sencha translate and there is no option to input translated protein fasta files directly. This is a problem for me because I have ~132 protein fasta files that took 3 days to process and up to ~12 hours (720m+) per fasta:
I'd like to input these files directly into sketch making so I don't have to go through the translation step again.
pranathivemuri
commented
4 years ago
Before adding
khtools extract-coding/sencha translate, older versions of kmermaid allowed for--peptide_fastato be a bunch of protein files who could then be sketched via sourmash directly. Now,--peptide_fastais used only forsencha translateand there is no option to input translated protein fasta files directly. This is a problem for me because I have ~132 protein fasta files that took 3 days to process and up to ~12 hours (720m+) per fasta:I'd like to input these files directly into sketch making so I don't have to go through the translation step again.