Dependencies for removing ribosomal reads - Githubissues

nf-core / kmermaid

k-mer similarity analysis pipeline

https://nf-co.re/kmermaid

MIT License

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Dependencies for removing ribosomal reads #77

Closed olgabot closed 4 years ago

olgabot commented 4 years ago

Adds sortMeRNA dependency from nf-core/rnaseq dev to remove ribosomal reads

https://github.com/nf-core/rnaseq/blob/4dc6d37cf3a0b338a74e19f38ae1f26ff5c4a65e/environment.yml#L34

PR checklist

[x] PR is to dev rather than master
[x] This comment contains a description of changes (with reason)
[x] Ensure the test suite passes (nextflow run . -profile test,docker).
[x] Make sure your code lints (nf-core lint .).
[x] CHANGELOG.md is updated

Learn more about contributing: https://github.com/nf-core/kmermaid/tree/master/.github/CONTRIBUTING.md