Currently, extract_per_cell_fastqs/ bam2fasta make_fastqs_percell uses the high_memory_long process configuration, which uses only 1 process. This is taking a very long time to finish for me (been running since 2020-05-14 12:28:02). So this PR increases the CPUs from 1 to 10.
PR checklist
[x] PR is to dev rather than master
[x] This comment contains a description of changes (with reason)
[x] Ensure the test suite passes (nextflow run . -profile test,docker).
Currently,
extract_per_cell_fastqs
/bam2fasta make_fastqs_percell
uses thehigh_memory_long
process configuration, which uses only 1 process. This is taking a very long time to finish for me (been running since 2020-05-14 12:28:02). So this PR increases the CPUs from 1 to 10.PR checklist
dev
rather thanmaster
nextflow run . -profile test,docker
).nf-core lint .
).CHANGELOG.md
is updated