lsf yml

[lekhakaranam]

Draft PR for LSF environment.yml.

PR checklist

• [x] PR is to dev rather than master
• [x] This comment contains a description of changes (with reason)

[pranathivemuri]

sorry, was just trying to figure if draft PR is causing lint status not reported

[pranathivemuri]

channels:
  - file://apps/conda-BioHPDA
  - conda-forge
  - defaults
dependencies:
  - python=3.7.6
  - r-data.table=1.12.4
  - r-gplots=3.0.1.1
  - bioconductor-edger=3.28.0
  - r-markdown=1.1
  - khmer=3.0.0a3
  - sphinx
  - matplotlib=3.1.1
  - alabaster
  - fastp=0.20.0
  - fastqc=0.11.9
  - pathos=0.2.5
  - pysam=0.15.4
  - multiqc=1.8
  - ska=1.0
  - seqtk=1.3
  - sourmash=3.2.2
  - r-gplots=3.0.1.1
  - jupyter=1.0.0
  - s3fs=0.4.2
  - samtools=1.10.0

[pranathivemuri]

the above is the environment file from Joanna, note - bam2fasta and sencha on the list are not accurate versions

[pranathivemuri]

@olgabot please merge when you can