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nf-core / mag

Assembly and binning of metagenomes
https://nf-co.re/mag
MIT License
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running mag with locally installed Kraken2 database #148

Open ramakrishnas opened 3 years ago

ramakrishnas commented 3 years ago

I was trying to run mag with the local instance of Kraken2 database as opposed to compressed minikraken. But from slack discussion learned that mag is configured only to process minikraken. I believe this feature will be very helpful for other users as well.

Thanks Rama

skrakau commented 3 years ago

Hi @ramakrishnas, thanks for opening this issue. mag expects a compressed database file, not necessarily minikraken. But you are right, this should be added in the future.