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nf-core / mag

Assembly and binning of metagenomes
https://nf-co.re/mag
MIT License
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Tiara is not included in bin_summary #544

Open maxibor opened 7 months ago

maxibor commented 7 months ago

Description of feature

Tiara results are not reported in the BIN_SUMMARY process. It would be nice to have it included to centralize the bin domain classification information. Similarly to #535 it would require adding the functionality to the bin/combine_tables.py script (ie. merging the `tiara_summary.tsv file produced by the TIARA_SUMMARY process)

maxibor commented 7 months ago

Example tiara_summary.tsv file (only the classification column would be really needed):

BinID   Prokarya    Eukarya Organelle   Unknown classification
MEGAHIT-MaxBin2-SZG018.001  NA  0   0   0   eukarya
MEGAHIT-MaxBin2-SZG018.002  1   3.4581592393601363e-209 3.457377783679859e-209  3.457377783679859e-209  prokarya
MEGAHIT-MaxBin2-SZG018.003  1   2.4125912832761363e-144 2.06802364667377e-144   2.067864414983475e-144  prokarya
MEGAHIT-MaxBin2-SZG018.004  1   2.116318385201147e-290  2.116318385201147e-290  2.116318385201147e-290  prokarya
MEGAHIT-MaxBin2-SZG018.005  1   2.526564404493635e-166  2.228376456618079e-175  2.2283541729649312e-175 prokarya
MEGAHIT-MaxBin2-SZG018.006  0   NA  0   0   prokarya
MEGAHIT-MaxBin2-SZG018.007  1   1.598405662291841e-104  1.5982793932322138e-104 1.5982793932322138e-104 prokarya