nf-core / mag

Assembly and binning of metagenomes
https://nf-co.re/mag
MIT License
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Add StrainXpress assembler #580

Open maxibor opened 5 months ago

maxibor commented 5 months ago

Description of feature

StrainXpress: strain aware metagenome assembly from short reads

Paper: https://academic.oup.com/nar/article/50/17/e101/6625806 Repo: https://github.com/HaploKit/StrainXpress Bioconda package: not yet but maybe https://github.com/kangxiongbin/StrainXpress/issues/12

Excerpt from the StrainXpress paper: