search

nf-core / mag

Assembly and binning of metagenomes
https://nf-co.re/mag
MIT License
192 stars 102 forks source link

Pipeline fails if only CONCOCT is turned on and other binners off #590

Open jfy133 opened 4 months ago

jfy133 commented 4 months ago

Description of the bug

Fails due to the if/else statement around input to SPLIT_FASTA in binning.nf only consideres maxbin2 and/or metabat or both (CONCOCT does not produce 'unbins'). Should add logic to account for this, and allow pipeline to continue even after without SPLIT_FASTA

Command used and terminal output

No response

Relevant files

No response

System information

No response