Closed skrakau closed 1 month ago
Yes, before I went travelling I was trying to address using the more recent container that allows us to fix this, this but it appears I have to replace the entire centrifuge workflow (can't mix and match local/non local modules 😞
Yes, before I went travelling I was trying to address using the more recent container that allows us to fix this, this but it appears I have to replace the entire centrifuge workflow (can't mix and match local/non local modules 😞
Oh no 😞
Related branch: https://github.com/nf-core/mag/tree/fix-centrifuge
Description of the bug
I tried to run nf-core/mag with the
test
profile on a new compute cluster and got the following error:The
.command.log
and.command.err
containI guess it is related to the Centrifuge problem with the tmp dir as described in https://github.com/nf-core/taxprofiler/issues/422 (and solved in https://github.com/nf-core/taxprofiler/pull/444). Just wanted to mention it here, in case it is still relevant.
Command used and terminal output