Closed camillevleal closed 1 month ago
This is likely a combination of you using a recent OSX Operation and we possibly have quite an old version of Bowtie2 that doesn't have conda support for osx-arm64
I will try and send you a work around to try soon (I'm off work this week, or you could ask on the nf-core slack how to replace a conda version in a module) but there is a large possibility that many of the tools won't work because of the same reason, the osx-arm64 support is relatively recently.
If you continue to test after the workaround, it would be great to get a list of tools that don't work.
Otherwise, the faster way to get the pipeline running is too use docker rather than conda, where this should not be an issue™️ (I run Linux so don't know for sure 😅)
Thank you @jfy133. I will try it using Docker and see if its works.
I will assume this worked :) feel free to reopen if you still had issues with docker
Description of the bug
I just installed the Nextflow and I am trying to do the test but I am getting the error pasted below. It's seems nextflow are trying to install Bowtie2, v. 2.4.2 but the package is not found in conda. How can I solve it?
Command used and terminal output
Relevant files
nextflow.log
System information
Nextflow: version 23.04.4 Hardware: Macbook Pro Executor: local Container engine: Conda OS: macOS Somona 14.6.1 Version of nf-core/mag: 3.0.2