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nf-core / marsseq

MARS-seq v2 pre-processing pipeline with velocity
https://nf-co.re/marsseq
MIT License
4 stars 3 forks source link

question about the genome #18

Open huawen-poppy opened 1 month ago

huawen-poppy commented 1 month ago

Description of feature

Hello! Thanks for developing such useful tool!

I noticed that currently, the genome parameter only accept human or mouse. I am wondering how could I use this tool to convert the MARS-seq data of Stylophora?

matq007 commented 1 month ago

Hi @huawen-poppy, if you want to use different genome, the only thing that you have to is to make a new entry in this location: https://github.com/nf-core/marsseq/blob/master/conf/genomes.config

You have to supply the reference genomes and the rest technically work out of the box.