add darkfield correction flag to default basicpy args

nf-core / mcmicro

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.

https://nf-co.re/mcmicro

MIT License

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Open jmuhlich opened 3 months ago

jmuhlich commented 3 months ago

Merge this into modules.config:

process {
    withName: BASICPY {
        ext.args = "--darkfield"
    }
}