I will create a local module to aggregate all single csv files from mcquant, to a single csv file.
An extra column will be created with "sample_id" as the labelling column.
Why? In the hackathon we want to create some simple modules that produce simple spatial analysis outputs.
Phenotyping with gates, and spatialLDA outputs.
@migueLib @chiarasch <-- working on SpatialLDA
I am aware that there is a step somewhere in vanilla mcmicro that does this, but we wanted a single module as a intermediate step.
Description of feature
Hey all,
I will create a local module to aggregate all single csv files from mcquant, to a single csv file. An extra column will be created with "sample_id" as the labelling column.
Why? In the hackathon we want to create some simple modules that produce simple spatial analysis outputs. Phenotyping with gates, and spatialLDA outputs. @migueLib @chiarasch <-- working on SpatialLDA
I am aware that there is a step somewhere in vanilla mcmicro that does this, but we wanted a single module as a intermediate step.