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nf-core / mcmicro

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
https://nf-co.re/mcmicro
MIT License
4 stars 12 forks source link

nf-validation isn't checking the files/directories in the samplesheets #34

Open RobJY opened 1 month ago

RobJY commented 1 month ago

Description of the bug

nf-validaton is not catching If a file given in the samplesheets does not exist

Command used and terminal output

No response

Relevant files

No response

System information

No response

RobJY commented 1 month ago

both exists and format parameters need to be present in the schema for nf-validate to catch missing files. I'll get these added.