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nf-core / mcmicro

An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
https://nf-co.re/mcmicro
MIT License
8 stars 13 forks source link

Add a staging module for macsima data. #40

Open VictorDidier opened 3 months ago

VictorDidier commented 3 months ago

Description of feature

create a local module to stage the macsima .tif files for usage with ashlar. Macsima produces .tif files per channel, per tile, per exposure time, etc. The staging module should stack all this .tif files into an ome.tif per cycle as ashlar requires.