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nf-core / metaboigniter

Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
https://nf-co.re/metaboigniter
MIT License
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Indexed mzML input #95

Open PayamEmami opened 6 months ago

PayamEmami commented 6 months ago

Description of the bug

If the input MSMS files are not indexed mzML the workflow fails at the parameter generation. We need to make sure that the files are index or do a reindexing.

Command used and terminal output

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Relevant files

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System information

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