Closed tillenglert closed 7 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 166b154
+| ✅ 177 tests passed |+
!| ❗ 9 tests had warnings |!
Hi @skrakau I think you can already review the PR, but there is still one piece missing:
The docker option: userEmulation will be deprecated and I "fixed" the permissions bug by reading the line. Therefore, this is not a failsafe option. I know that for MHCQuant the issue was solved and I will recreate the same for metapep. This will be one line in the epitope prediction module and one within the modules config.
✅
As the last template update was some versions ago, I created a branch on my repo to thoroughly work through the changes and include some additional optional changes, which needed some work on the existing pipeline.
I needed to change quite a lot:
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).