Closed tillenglert closed 4 months ago
PR will implement nf-test on Pipeline level and mimics the previous CI tests (Only checking for pipeline success. A second PR will then add assertions to each test to check results of the pipeline runs.
Additional tests (needing ncbi_key and ncbi_email) are tested on the synced PR: https://github.com/nf-core/metapep/pull/119
nf-core lint
nf-test test main.nf.test -profile test,docker
nextflow run . -profile debug,test,docker --outdir <OUTDIR>
docs/usage.md
docs/output.md
CHANGELOG.md
README.md
Posted for pipeline commit 879ee06
+| ✅ 192 tests passed |+ #| ❔ 2 tests were ignored |# !| ❗ 2 tests had warnings |! -| ❌ 5 tests failed |-
PR will implement nf-test on Pipeline level and mimics the previous CI tests (Only checking for pipeline success. A second PR will then add assertions to each test to check results of the pipeline runs.
Additional tests (needing ncbi_key and ncbi_email) are tested on the synced PR: https://github.com/nf-core/metapep/pull/119
PR checklist
nf-core lint
).nf-test test main.nf.test -profile test,docker
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).