Closed tillenglert closed 2 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 3487024
+| ✅ 196 tests passed |+
#| ❔ 2 tests were ignored |#
!| ❗ 2 tests had warnings |!
As the changes within the pipeline accumulated quite a lot, I split the PR into two #127 and #128 which include the same changes as this PR, but a bit more organised and without that many snapshot updated and commits. As soon as both PRs are merged, I will delete this one and the test branch for entrez tests.
Both assertions and refactors are merged in #127 #128.
This PR populates the nf-test framework with assertions.
Tests needing Entrez Download are tested in PR #119
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).