SQL databse as result - Githubissues

nf-core / metapep

From metagenomes to epitopes and beyond

https://nf-co.re/metapep

MIT License

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SQL databse as result #138

Open tillenglert opened 1 month ago

tillenglert commented 1 month ago

Description of feature

The Pipeline could provide an SQL database as result. The requirements of the relational datamodel are already in place and the db would enhance the results of this pipeline immensely.

tillenglert commented 3 weeks ago

SQL could also be used to process the underlying relational data model. But how to deploy the database in the background to be available during the pipeline needs to be sorted. This could improve the resource usage in regard to I/O of database tables and compression of those.