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nf-core / metapep

From metagenomes to epitopes and beyond
https://nf-co.re/metapep
MIT License
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Current version doesn't work with syfpeithi and mouse alleles #37

Closed skrakau closed 1 year ago

skrakau commented 1 year ago

Description of the bug

The current pipeline version doesn't work with syfpeithi and mouse alleles:

WARNING - PREDICTION (syfpeithi 1.0) - No model found for H-2-Db with length 9

Thought the test_mouse with syfpeithi and this particular mouse allele worked before, but not sure. This needs to be checked, was something changed in this context? It would be good to use syfpeithi as soon as possible for some full-size tests to reduce the required compute resources.

(since the test_mouse uses the protein download path, which anyway doesn't work currently, it probably didn't attract attention recently)

Command used and terminal output

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Relevant files

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System information

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tillenglert commented 1 year ago

Still the peptide length needs to be checked before peptide prediction is started (will be included as extra process). (https://github.com/nf-core/metapep/issues/48)