Closed tillenglert closed 1 year ago
nf-core lint
overall result: Failed :x:Posted for pipeline commit fe1e70a
+| ✅ 151 tests passed |+
!| ❗ 11 tests had warnings |!
-| ❌ 5 tests failed |-
Nice :)
Lints for nf-core v2.9 and is merged with bypass.
I reworked the chunk size parameters to have a more meaningful association to the respective processes and used the test_full to adjust the chunk sizes to generate feasible 160 jobs instead of >5000 very small ones. In this process the
MERGE_PREDICTIONS_BUFFER
was getting inefficient as it is only needed for 1000+ predictions. As this may still happen for real data I made the process optional if the files exceed the new parameter--pred_buffer_files
(I made a parameter to allow premerging if others may run into different problems where only fewer merges are allowed/feasible)PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).